Publications: 2009 - 2008

T. Butler, N. Goldenfeld, D. Mathew, and Z. Luthey-Schulten
Extreme genetic code optimality from a molecular dynamics calculation of amino acid polar requirement
Phys. Rev. E, 79:060901, 2009

A. Sethi, J. Eargle, A. Black, and Z. Luthey-Schulten
Dynamical Networks in tRNA:protein complexes
Proc. Natl. Acad. Sci. U S A, 106(16):6620-6625, 2009
Supplementary Material

E. Roberts, J.E. Stone, L. Sepulveda, W.-M.W. Hwu, and Z. Luthey-Schulten
Long time-scale simulations of in vivo diffusion using GPU hardware
Parallel & Distributed Processing, 2009, IPDPS 2009. IEEE International Symposium on, vol., no., pp.1,8,23-29 May 2009 doi: 10.1109/IPDPS.2009.5160930

K. Chen, E. Roberts, and Z. Luthey-Schulten
Horizontal gene transfer of zinc and non-zinc forms of bacterial ribosomal protein S4
BMC Evol. Biol., 9:179, 2009

E. Roberts, A. Sethi, J. Montoya, C.R. Woese, and Z. Luthey-Schulten
Molecular signatures of ribosomal evolution
Proc. Natl. Acad. Sci. U S A, 105(37):13953-8, 2008
Supplementary Material

J. Eargle, A. Black, A. Sethi, L. Trabuco, and Z. Luthey-Schulten
Dynamics of recognition between tRNA and Elongation Factor Tu
J. Mol. Biol., 377(5):1382-405, 2008
- Parameter file for modified nucleosides (inp).
- Topology file for modified nucleosides (inp).

D.C. Mathew and Z. Luthey-Schulten
On the physical basis of the amino acid polar requirement
J Mol Evol 66(5):519-28, 2008