K. Chen, J. Eargle, J. Lai, H, Kim, T. Ha, T. Abeysirigunawardena, M. Mayerle, S. Woodson, and Z. Luthey-Schulten
Assembly of the fiveway junction in the ribosomal small subunit using hybrid MD/Go simulation
Accepted: Journal of Physical Chemistry B: Harold A. Scheraga Festschrift
L. Li, S. A. Martinis, and Z. Luthey-Schulten
Atomic level simulation revealed energy landscape of ATP binding to GluRS
Submitted
J. Eargle, and Z. Luthey-Schulten
Network Viewer
Submitted
J. Eargle and Z. A. Luthey-Schulten
Chapter 11: Simulating Dynamics in RNA-Protein Complexes
In RNA 3D Structure Analysis and Prediction
N. Leontis and E. Westhof (editors)
Nucleic Acids and Molecular Biology 27, DOI 10.1007/978-3-642-25740-7_11, Springer-Verlag Berlin Heidelberg 2012
L. Li, M. T. Boniecki, J. D. Jaffe, B. S. Imai, P. M. Yau, Z. Luthey-Schulten, and S. A. Martinis
Naturally occurring aminoacyl-tRNA synthetases editing-domain mutations that cause mistranslation in Mycoplasma parasites
Proc. Nat. Acad. Sci., 109(9),9378-9383, 2011
M. Assaf, E. Roberts, and Z. Luthey-Schulten
Determining the Stability of Genetic Switches: Explicitly Accounting for mRNA Noise
Phys. Rev. Lett., 106, 248102, 2011
E. Roberts, A. Magis, J.O. Ortiz, W. Baumeister, and Z. Luthey-Schulten
Noise Contributions in an Inducible Genetic Switch: A Whole-Cell Simulation Study
PLoS. Comput. Biol., 7(3):e1002010, 2011
K. Chen, J. Eargle, K. Sarkar, M. Gruebele, and Z. Luthey-Schulten
Functional role of ribosomal signatures
Biophys. J., 99(12):3930-3940, 2010
L. Trabuco, E. Schreiner, J. Eargle, P. Cornish, T.J. Ha, Z. Luthey-Schulten, and K. Schulten
The role of L1 stalk:tRNA interaction in the ribosome elongation cycle
J. Mol. Biol., 402:741-760, 2010
A.B. Pyrkosz, J. Eargle, A. Sethi, and Z. Luthey-Schulten
Exit strategies for charged tRNA from GluRS
J. Mol. Biol., 397:1350-1371, 2010
- Structure file for CysRS:tRNA(Cys):Glu-AMP model (pdb).
- Figure of CysRS:tRNA(Cys):Glu-AMP model (pdf).
D. Mathew, and Z. Luthey-Schulten
Influence of Montmorillonite on Nucleotide Oligomerization Reactions: A Molecular Dynamics Study
Ori. Life Evol. Biosp., 40:303-317, 2010
Animation of mononumcletide interaction with trinucleotide in montmorillonite clay (mpg).
R.W. Alexander, J. Eargle, and Z. Luthey-Schulten
Experimental and computational analysis of tRNA dynamics
FEBS Letters, 584(2):376-386, 2010
