Dynamical Network Analysis

This tutorial introduces several network analysis methods for examining dynamic signaling in biomolecular systems. The NetworkView plugin to VMD is used to display and manipulate representations of the networks projected onto the underlying molecular structures. The tutorial is designed such that it can be used by both new and experienced users of VMD, however, it is highly recommended that new users go through the “VMD Molecular Graphics” tutorial in order to gain a working knowledge of the program. This tutorial should take about two hours to complete in its entirety.

The tutorial document is currently available as a PDF (4 MB): View Tutorial
(Creation date: 2012-06-13 / Upload date: 2012-06-26)

Files used in the tutorial are available as a compressed file: (192 MB): Download Tutorial

Department of Chemistry | Department of Physics | NIH Resource for Macromolecular Modeling and Bioinformatics | Center for Biophysics and Computational Biology

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