Complete Listing (with graphics)    |    Complete Listing (without graphics)    |   Reviews and Other Publications    |  Publications with Undergraduates

Names of undergraduate coauthors from the Silverman Lab are in boldface.

111. "DNAzyme-Catalyzed Site-Specific N-Acylation of DNA Oligonucleotide Nucleobases", M. M. Kennebeck, C. K. Kaminsky, M. A. Massa, P. K. Das, R. D. Boyd, M. Bishka, J. T. Tricarico, and S. K. Silverman, Angew. Chem. Int. Ed. 2024, 63, e202317565. [pdf] [Supp Info] [PubMed entry]

108. "DNAzymes for Amine and Peptide Lysine Acylation", T. Yao, J. J. Przybyla, P. Yeh, A. M. Woodard, H. J. Nilsson, B. M. Brandsen, and S. K. Silverman, Org. Biomol. Chem. 2021, 19, 171-181. [pdf] [Supp Info] [PubMed entry]

107. "DNA-Catalyzed DNA Cleavage by a Radical Pathway with Well-Defined Products", Y. Lee, P. C. Klauser, B. M. Brandsen, C. Zhou, X. Li, and S. K. Silverman, J. Am. Chem. Soc. 2017, 139, 255-261. [pdf] [PubMed entry]

106. "DNA-Catalyzed Glycosylation Using Aryl Glycoside Donors", A. R. Hesser, B. M. Brandsen, S. M. Walsh, P. Wang, and S. K. Silverman, Chem. Commun. 2016, 52, 9259-9262. [pdf] [Supp Info] [PubMed entry] [Correction]

102. "DNA Oligonucleotide 3'-Phosphorylation Catalyzed by a DNA Enzyme", A. J. Camden, S. M. Walsh, S. H. Suk, and S. K. Silverman, Biochemistry 2016, 55, 2671-2676. [pdf] [Supp Info] [PubMed entry]

101. "DNA-Catalyzed Amide Hydrolysis", C. Zhou, J. L. Avins, P. C. Klauser, B. M. Brandsen, Y. Lee, and S. K. Silverman, J. Am. Chem. Soc. 2016, 138, 2106-2109. [pdf] [Supp Info] [PubMed entry] [Chemical & Engineering News highlight]

100. "Identification of Sequence-Selective Tyrosine Kinase Deoxyribozymes", S. M. Walsh, S. N. Konecki, and S. K. Silverman, J. Mol. Evol. 2015, 81, 218-224. [pdf] [PubMed entry]

99. "Phosphoserine Lyase Deoxyribozymes: DNA-Catalyzed Formation of Dehydroalanine Residues in Peptides", J. Chandrasekar, A. C. Wylder, and S. K. Silverman,
J. Am. Chem. Soc. 2015, 137, 9575-9578. [pdf] [Supp Info] [PubMed entry]

95. "DNA-Catalyzed Lysine Side Chain Modification", B. M. Brandsen, T. E. Velez, A. Sachdeva, N. A. Ibrahim, and S. K. Silverman, Angew. Chem. Int. Ed. 2014, 53, 9045-9050. [pdf] [Supp Info] [PubMed entry]

93. "DNA-Catalyzed Hydrolysis of Esters and Aromatic Amides", B. M. Brandsen, A. R. Hesser, M. A. Castner, M. Chandra, and S. K. Silverman, J. Am. Chem. Soc. 2013, 135, 16014-16017. [pdf] [Supp Info] [PubMed entry]

91. "DNA Catalysis of a Normally Disfavored RNA Hydrolysis Reaction", D. J. Parker, Y. Xiao, J. M. Aguilar, and S. K. Silverman, J. Am. Chem. Soc. 2013, 135, 8472-8475. [pdf] [Supp Info] [PubMed entry]

89. "Systematic Evaluation of the Dependence of Deoxyribozyme Catalysis on Random Region Length", T. E. Velez, J. Singh, Y. Xiao, E. C. Allen, O. Wong, M. Chandra, S. C. Kwon, and S. K. Silverman, ACS Comb. Sci. 2012, 14, 680-687. [pdf] [Supp Info] [PubMed entry]

85. "Establishing Broad Generality of DNA Catalysts for Site-Specific Hydrolysis of Single-Stranded DNA", Y. Xiao, R. J. Wehrmann, N. A. Ibrahim, and S. K. Silverman, Nucleic Acids Res. 2012, 40, 1778-1786. [pdf] [Supp Info] [PubMed entry]

83. "DNA-Catalyzed Reductive Amination", O. Wong, A. E. Mulcrone, and S. K. Silverman, Angew. Chem. Int. Ed. 2011, 50, 11679-11684. [pdf] [Supp Info] [PubMed entry]

81. "Merely Two Mutations Switch a DNA-Hydrolyzing Deoxyribozyme from Heterobimetallic (Zn²⁺/Mn²⁺) to Monometallic (Zn²⁺-only) Behavior", Y. Xiao, E. C. Allen, and S. K. Silverman, Chem. Commun. 2011, 47, 1749-1751. [pdf] [Supp Info] [PubMed entry]

80. "Improved Deoxyribozymes for Synthesis of Covalently Branched DNA and RNA", C. S. Lee, T. P. Mui, and S. K. Silverman, Nucleic Acids Res. 2011, 39, 269-279. [pdf] [Supp Info] [PubMed entry]

70. "Controlling the Direction of Site-Selectivity and Regioselectivity in RNA Ligation by Zn²⁺-Dependent Deoxyribozymes That Use 2',3'-Cyclic Phosphate RNA Substrates", D. M. Kost, J. P. Gerdt, P. I. Pradeepkumar, and S. K. Silverman, Org. Biomol. Chem. 2008, 6, 4391-4398. [pdf] [Supp Info] [PubMed entry]

69. "Selective Stabilization of Natively Folded RNA Structure by DNA Constraints", J. P. Gerdt, C. V. Miduturu, and S. K. Silverman, J. Am. Chem. Soc. 2008, 130, 14920-14921. [pdf] [Supp Info] [PubMed entry]

68. "Convergent and General DNA-Catalyzed One-Step Synthesis of Multiply Branched DNA", T. P. Mui and S. K. Silverman, Org. Lett. 2008, 10, 4417-4420. [pdf] [Supp Info] [PubMed entry]

62. "Improvement of DNA Adenylation Using T4 DNA Ligase with a Template Strand and a Strategically Mismatched Acceptor Strand", M. P. Patel, D. A. Baum, and S. K. Silverman, Bioorg. Chem. 2008, 36, 46-56. [pdf] [PubMed entry]

41. "General Deoxyribozyme-Catalyzed Synthesis of Native 3'–5' RNA Linkages", W. E. Purtha, R. L. Coppins, M. K. Smalley, and S. K. Silverman, J. Am. Chem. Soc. 2005, 127, 13124-13125. [pdf] [Supp Info] [PubMed entry]

36. "Zn²⁺-Dependent Deoxyribozymes That Form Natural and Unnatural RNA Linkages", K. A. Hoadley, W. E. Purtha, A. C. Wolf, A. Flynn-Charlebois, and S. K. Silverman, Biochemistry 2005, 44, 9217-9231. [pdf] [Supp Info] [PubMed entry]

33. "Parallel Selections in Vitro Reveal a Preference for 2’-5’ RNA Ligation By Deoxyribozyme-Mediated Opening of a 2’,3’-Cyclic Phosphate", D. R. Semlow and S. K. Silverman, J. Mol. Evol. 2005, 61, 207-215. [pdf] [PubMed entry]

27. "Structure-Function Correlations Derived from Faster Variants of an RNA Ligase Deoxyribozyme", T. K. Prior, D. R. Semlow, A. Flynn-Charlebois, I. Rashid, and S. K. Silverman, Nucleic Acids Res. 2004, 32, 1075-1082. [pdf] [Supp Info] [PubMed entry]

23. "Optimization and Generality of a Small Deoxyribozyme that Ligates RNA", B. L. Ricca, A. C. Wolf, and S. K. Silverman, J. Mol. Biol. 2003, 330, 1015-1025. [pdf] [Supp Info] [PubMed entry]

21. "In Vitro Evolution of an RNA-Cleaving DNA Enzyme into an RNA Ligase Switches the Selectivity from 3'-5' to 2'-5'", A. Flynn-Charlebois, T. K. Prior, K. A. Hoadley, and S. K. Silverman, J. Am. Chem. Soc. 2003, 125, 5346-5350. [pdf] [Supp Info] [PubMed entry]

19. "Deoxyribozymes with 2'-5' RNA Ligase Activity", A. Flynn-Charlebois, Y. Wang, T. K. Prior, K. A. Hoadley, R. L. Coppins, A. C. Wolf, and S. K. Silverman, J. Am. Chem. Soc. 2003, 125, 2444-2454. [pdf] [Supp Info] [PubMed entry]

18. "The GAAA Tetraloop/Receptor Interaction Contributes Differentially to Folding Thermodynamics and Kinetics for the P4-P6 RNA Domain", B. T. Young and S. K. Silverman, Biochemistry 2002, 41, 12271-12276. [pdf] [PubMed entry]

<top