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pyLM
v1.1
A Python Problem Solving Environment for the simulation of stochastic biological systems
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pyLM
v1.1
A Python Problem Solving Environment for the simulation of stochastic biological systems
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Functions | |
| def | importSBMLModel |
| Helper Functions ##. More... | |
| def | importSBMLModelL3V1 |
| def | getRate |
| def | readSBMLtoCME |
| Read an SBML file for the reaction model for a CME simulation. More... | |
| def | readSBMLtoRDME |
| Read an SBML file for the reaction model for a RDME simulation. More... | |
| def | readSBMLtoRegion |
| Read an SBML file for the reaction model into a specific region of the RDME simulation. More... | |
| def pySTDLM.SBMLReader.getRate | ( | rxn, | |
| rcts, | |||
| prds, | |||
| sim, | |||
| globalP, | |||
| globalPV | |||
| ) |
| def pySTDLM.SBMLReader.importSBMLModel | ( | filename | ) |
Helper Functions ##.
| def pySTDLM.SBMLReader.importSBMLModelL3V1 | ( | model, | |
| sim, | |||
region = None |
|||
| ) |
| def pySTDLM.SBMLReader.readSBMLtoCME | ( | sim, | |
| filename | |||
| ) |
Read an SBML file for the reaction model for a CME simulation.
| sim | A CMESimulation object |
| filename | A SBML filename/filepath |
| def pySTDLM.SBMLReader.readSBMLtoRDME | ( | sim, | |
| filename | |||
| ) |
Read an SBML file for the reaction model for a RDME simulation.
| sim | A RDMESimulation object |
| filename | A SBML filename/filepath |
| def pySTDLM.SBMLReader.readSBMLtoRegion | ( | sim, | |
| region, | |||
| filename | |||
| ) |
Read an SBML file for the reaction model into a specific region of the RDME simulation.
| sim | A RDMESimulation object |
| region | A region name that already exists in the RDMESimulation |
| filename | A SBML filename/filepath |
1.8.6
