pySTDLM Namespace Reference

A standard library of functionality that is commonly used in biological simulations. More...

Namespaces
	CellArranger
	Cells
	Distributions
	Fitting
	NetworkVisualization
	OnTheFly
	PostProcessing
	SBMLReader
	StandardCells
	StandardReactions
	StandardReactionSystems

Variables
list	__all__ = ['StandardReactions', 'StandardReactionSystems', 'StandardCells', 'Cells', 'CellArranger', 'Distributions', 'PostProcessing', 'NetworkVisualization']

Detailed Description

A standard library of functionality that is commonly used in biological simulations.

Three sets of functionality exist including "StandardReactions" which include standard reactions such as Michealis-Menton, membrane transport, transporters, etc. "StandardReactionSystems" includes published reaction systems from a variety of cells including the MinDE system, Lac switch systems in E. coli etc. Finally, "StandardCells" includes a number of standard cell geometries.

Variable Documentation

list pySTDLM.__all__ = ['StandardReactions', 'StandardReactionSystems', 'StandardCells', 'Cells', 'CellArranger', 'Distributions', 'PostProcessing', 'NetworkVisualization']