pySTDLM.StandardCells Namespace Reference

Functions
def	buildEColiCell
	Build a standard E coli cell 0.5 microns across and 2 microns long. More...
def	buildDividingEColiCell
	Build a standard E coli cell 0.5 microns across and 4 microns long. More...
def	buildSphericalEColiCell
	Build a Spherical E coli cell, one that lacks the gene for elongation. More...
def	buildFilamentousEColiCell
	Build a long filamentous E coli cell where the user can specify the length. More...
def	packFastGrowingEcoli
	Pack a cell with the protein distribution for fast growing E coli. More...
def	packSlowGrowingEcoli
	Pack a cell with the protein distribution for fast growing E coli. More...

Function Documentation

def pySTDLM.StandardCells.buildDividingEColiCell	(		sim,
			crowded = False,
			crowdedMembrane = False
	)

Build a standard E coli cell 0.5 microns across and 4 microns long.

Parameters

sim	An RDMESimulation object
crowded	Should the cytosol be crowded (default: false)
crowdedMembrane	Should the membrane be crowded (default: false)

def pySTDLM.StandardCells.buildEColiCell	(		sim,
			crowded = False,
			crowdedMembrane = False
	)

Build a standard E coli cell 0.5 microns across and 2 microns long.

Parameters

sim	An RDMESimulation object
crowded	Should the cytosol be crowded (default: false)
crowdedMembrane	Should the membrane be crowded (default: false)

def pySTDLM.StandardCells.buildFilamentousEColiCell	(		sim,
			length = 8.0,
			crowded = False,
			crowdedMembrane = False
	)

Build a long filamentous E coli cell where the user can specify the length.

Parameters

sim	An RDMESimulation object
length	The length of the cell in microns (default: 8)
crowded	Should the cytosol be crowded (default: false)
crowdedMembrane	Should the membrane be crowded (default: false)

def pySTDLM.StandardCells.buildSphericalEColiCell	(		crowded = False,
			latticeSpacing = 16,
			crowdedMembrane = False
	)

Build a Spherical E coli cell, one that lacks the gene for elongation.

Parameters

sim	An RDMESimulation object
crowded	Should the cytosol be crowded (default: false)
crowdedMembrane	Should the membrane be crowded (default: false)

def pySTDLM.StandardCells.packFastGrowingEcoli

(

sim

)

Pack a cell with the protein distribution for fast growing E coli.

Parameters

sim	A RDMESimulation object

def pySTDLM.StandardCells.packSlowGrowingEcoli

(

sim

)

Pack a cell with the protein distribution for fast growing E coli.

Parameters

sim	A RDMESimulation object