Base class for a particular cell type for use in CellArranger (and later more)
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Base class for a particular cell type for use in CellArranger (and later more)
| def pySTDLM.Cells.CellShape.__init__ |
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self | ) |
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| def pySTDLM.Cells.CellShape.addToSimulation |
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self, |
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sim |
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) |
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Add the cell to the simulation.
- Parameters
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| self | |
| sim | An RDMESimulation object |
| def pySTDLM.Cells.CellShape.boundingBox |
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self | ) |
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Return a bounding box for the cell TODO: Make it return an orientation as well.
| def pySTDLM.Cells.CellShape.createModelCell |
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self, |
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attr |
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) |
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Create model cell.
- Parameters
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| self | |
| attrs | A dictionary of attributes |
| def pySTDLM.Cells.CellShape.getVolume |
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self | ) |
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Volume occupied by cell NOTE: When overriding this class, you must specify a "computeVolume()" function of no arguments.
- Returns
- volume In intrinsic units
| def pySTDLM.Cells.CellShape.setRegions |
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self, |
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membrane, |
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cytoplasm |
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) |
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Set regions.
- Parameters
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| self | |
| membrane | The name of the region in which the membrane should be considered |
| cytoplasm | The name of the region in which the cytoplasm should be considered |
| def pySTDLM.Cells.CellShape.translateCell |
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self, |
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point |
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) |
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Shift a cell in space by the specified amount.
- Parameters
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| self | |
| point | [x,y,z] translation in space |
| pySTDLM.Cells.CellShape.cyttype |
| pySTDLM.Cells.CellShape.maxs |
| pySTDLM.Cells.CellShape.membraneThickness |
| pySTDLM.Cells.CellShape.memtype |
| pySTDLM.Cells.CellShape.mins |
| pySTDLM.Cells.CellShape.name |
| pySTDLM.Cells.CellShape.volume |
The documentation for this class was generated from the following file:
1.8.6
