pyLM  v1.1
A Python Problem Solving Environment for the simulation of stochastic biological systems
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Class Hierarchy
This inheritance list is sorted roughly, but not completely, alphabetically:
[detail level 123]
oCpySTDLM.CellArranger.CellArrangerA base class for laying out cells in a 3D space
|oCpySTDLM.CellArranger.LooseGridArrangerAn arranger that orients cells in square grid with padding in between
|oCpySTDLM.CellArranger.RandomArrangerAn arranger that randomly orients a number of cells in a regin until either a count or a volume fraction target is met
|oCpySTDLM.CellArranger.RandomSphericalArrangerAn arranger that randomly orients a number of cells in a sphere inside a regin until either a count or a volume fraction target is met
|\CpySTDLM.CellArranger.TightGridArrangerAn arranger that orients cells in square grid
oCpySTDLM.Cells.CellShapeBase class for a particular cell type for use in CellArranger (and later more)
|oCpySTDLM.Cells.BoxCellA representation for a spherical cell
|oCpySTDLM.Cells.CapsuleCellA representation for a spherical cell
||\CpySTDLM.Cells.CapsuleShellCellA representation for a spherical cell
|\CpySTDLM.Cells.SphereCellA representation for a spherical cell
oCpyLM.CME.CMESimulationA CME simulation that contains reactions and species
oCpyLM.RDME.CMESimulationA CME simulation that contains reactions and species
oCpySTDLM.Fitting.Comparator
|oCpySTDLM.Fitting.MomentComparator
|\CpySTDLM.Fitting.TraceComparator
oCpySTDLM.Fitting.Fitter
|oCpySTDLM.Fitting.SimulatedAnnealingFitter
|\CpySTDLM.Fitting.SweepFitter
oCHandler
|\CpyLM.LMLogger.NullHandler
oCpySTDLM.Distributions.ParticleGeneratorA particle generator that adds particles to a particular region of a simulation
oCpyLM.RDME.RDMERegionA class that represents a type region of an RDME simulation
\CpyLM.RDME.RDMESimulationA class that contains all regions, reactions, diffusions and rules for a RDME simulation
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