pyLM
v1.1
A Python Problem Solving Environment for the simulation of stochastic biological systems
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A representation for a spherical cell. More...
Public Member Functions | |
def | __init__ |
def | internalModelCell |
def | computeVolume |
def | internalAddToSim |
def | internalTranslateCell |
Public Member Functions inherited from pySTDLM.Cells.CellShape | |
def | __init__ |
def | getVolume |
Volume occupied by cell NOTE: When overriding this class, you must specify a "computeVolume()" function of no arguments. More... | |
def | boundingBox |
Return a bounding box for the cell TODO: Make it return an orientation as well. More... | |
def | addToSimulation |
Add the cell to the simulation. More... | |
def | translateCell |
Shift a cell in space by the specified amount. More... | |
def | createModelCell |
Create model cell. More... | |
def | setRegions |
Set regions. More... | |
Public Attributes | |
name | |
p1 | |
p2 | |
mins | |
maxs | |
width | |
height | |
depth | |
membraneThickness | |
Public Attributes inherited from pySTDLM.Cells.CellShape | |
name | |
volume | |
mins | |
maxs | |
membraneThickness | |
memtype | |
cyttype | |
A representation for a spherical cell.
This cell requires an attribute dictionary that includes "width", "height", "depth" and "membraneThickness"
def pySTDLM.Cells.BoxCell.__init__ | ( | self, | |
p1 = 3*[0.] , |
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p2 = 3*[0.] |
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) |
def pySTDLM.Cells.BoxCell.computeVolume | ( | self | ) |
def pySTDLM.Cells.BoxCell.internalAddToSim | ( | self, | |
sim | |||
) |
def pySTDLM.Cells.BoxCell.internalModelCell | ( | self, | |
attr | |||
) |
def pySTDLM.Cells.BoxCell.internalTranslateCell | ( | self, | |
point | |||
) |
pySTDLM.Cells.BoxCell.depth |
pySTDLM.Cells.BoxCell.height |
pySTDLM.Cells.BoxCell.maxs |
pySTDLM.Cells.BoxCell.membraneThickness |
pySTDLM.Cells.BoxCell.mins |
pySTDLM.Cells.BoxCell.name |
pySTDLM.Cells.BoxCell.p1 |
pySTDLM.Cells.BoxCell.p2 |
pySTDLM.Cells.BoxCell.width |