pyLM
v1.1
A Python Problem Solving Environment for the simulation of stochastic biological systems
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- a -
addedLast :
pySTDLM.Distributions.ParticleGenerator
allowedCellTypes :
pySTDLM.CellArranger.CellArranger
allowedForms :
pySTDLM.CellArranger.CellArranger
arrangerAttributes :
pySTDLM.CellArranger.CellArranger
- c -
cellAttributes :
pySTDLM.CellArranger.CellArranger
cells :
pySTDLM.CellArranger.CellArranger
cellType :
pySTDLM.CellArranger.CellArranger
comparator :
pySTDLM.Fitting.TraceComparator
continousDimensions :
pyLM.RDME.RDMESimulation
customAddedParticleList :
pyLM.RDME.RDMESimulation
cyttype :
pySTDLM.Cells.CellShape
- d -
data :
pySTDLM.Fitting.TraceComparator
defaultDiffusionRate :
pyLM.RDME.RDMERegion
depth :
pySTDLM.Cells.BoxCell
diffusionRate :
pyLM.RDME.RDMERegion
divisions :
pySTDLM.Fitting.SweepFitter
- e -
experiments :
pySTDLM.Fitting.Fitter
- f -
filename :
pyLM.CME.CMESimulation
,
pyLM.RDME.CMESimulation
,
pyLM.RDME.RDMESimulation
- g -
generator :
pySTDLM.Distributions.ParticleGenerator
- h -
hasBeenDiscretized :
pyLM.RDME.RDMESimulation
hasFit :
pySTDLM.Fitting.Fitter
,
pySTDLM.Fitting.SweepFitter
height :
pySTDLM.Cells.BoxCell
- i -
initial_counts :
pyLM.CME.CMESimulation
,
pyLM.RDME.CMESimulation
,
pyLM.RDME.RDMESimulation
- l -
lattice :
pyLM.RDME.RDMESimulation
latticeSpacing :
pyLM.RDME.RDMESimulation
length :
pySTDLM.Cells.CapsuleCell
,
pySTDLM.Cells.CapsuleShellCell
lm_builder :
pyLM.RDME.RDMESimulation
- m -
maxs :
pySTDLM.Cells.BoxCell
,
pySTDLM.Cells.CapsuleCell
,
pySTDLM.Cells.CapsuleShellCell
,
pySTDLM.Cells.CellShape
,
pySTDLM.Cells.SphereCell
membraneThickness :
pySTDLM.Cells.BoxCell
,
pySTDLM.Cells.CapsuleCell
,
pySTDLM.Cells.CapsuleShellCell
,
pySTDLM.Cells.CellShape
,
pySTDLM.Cells.SphereCell
memtype :
pySTDLM.Cells.CellShape
mins :
pySTDLM.Cells.BoxCell
,
pySTDLM.Cells.CapsuleCell
,
pySTDLM.Cells.CapsuleShellCell
,
pySTDLM.Cells.CellShape
,
pySTDLM.Cells.SphereCell
moment :
pySTDLM.Fitting.MomentComparator
- n -
name :
pyLM.CME.CMESimulation
,
pyLM.RDME.CMESimulation
,
pyLM.RDME.RDMERegion
,
pyLM.RDME.RDMESimulation
,
pySTDLM.Cells.BoxCell
,
pySTDLM.Cells.CapsuleCell
,
pySTDLM.Cells.CapsuleShellCell
,
pySTDLM.Cells.CellShape
,
pySTDLM.Cells.SphereCell
- o -
origin :
pySTDLM.Cells.SphereCell
- p -
p1 :
pySTDLM.Cells.BoxCell
,
pySTDLM.Cells.CapsuleCell
,
pySTDLM.Cells.CapsuleShellCell
p2 :
pySTDLM.Cells.BoxCell
,
pySTDLM.Cells.CapsuleCell
,
pySTDLM.Cells.CapsuleShellCell
packerName :
pySTDLM.CellArranger.CellArranger
parameters :
pyLM.CME.CMESimulation
,
pyLM.RDME.CMESimulation
,
pyLM.RDME.RDMESimulation
,
pySTDLM.Fitting.Fitter
particleMap :
pyLM.CME.CMESimulation
,
pyLM.RDME.CMESimulation
,
pyLM.RDME.RDMESimulation
particlename :
pySTDLM.Distributions.ParticleGenerator
- r -
radius :
pySTDLM.Cells.CapsuleCell
,
pySTDLM.Cells.CapsuleShellCell
,
pySTDLM.Cells.SphereCell
reactions :
pyLM.CME.CMESimulation
,
pyLM.RDME.CMESimulation
,
pyLM.RDME.RDMERegion
regions :
pyLM.RDME.RDMESimulation
replicates :
pyLM.CME.CMESimulation
,
pyLM.RDME.CMESimulation
,
pyLM.RDME.RDMESimulation
- s -
sem :
pySTDLM.Fitting.MomentComparator
siteTypes :
pyLM.RDME.RDMESimulation
specie :
pySTDLM.Fitting.Comparator
species_id :
pyLM.CME.CMESimulation
,
pyLM.RDME.CMESimulation
,
pyLM.RDME.RDMESimulation
- t -
times :
pySTDLM.Fitting.TraceComparator
totalAdded :
pySTDLM.Distributions.ParticleGenerator
transitionRates :
pyLM.RDME.RDMESimulation
- v -
value :
pySTDLM.Fitting.MomentComparator
volume :
pyLM.CME.CMESimulation
,
pyLM.RDME.CMESimulation
,
pySTDLM.Cells.CellShape
- w -
width :
pySTDLM.Cells.BoxCell
Generated on Wed Nov 9 2016 10:47:46 for pyLM by
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