Dynamical Network Analysis

Network Analysis

Dynamical Network Analysis is a method of characterizing allosteric signalling through biomolecular complexes.

Representative papers related to Dynamical Network Analysis:

R.W. Alexander, J. Eargle, and Z. Luthey-Schulten
Experimental and computational analysis of tRNA dynamics
FEBS Letters, 584(2):376-386, 2010

Alexis Black Pyrkosz, John Eargle, Anurag Sethi, and Zaida Luthey-Schulten
Exit strategies for charged tRNA from GluRS
J. Mol. Biol., 397:1350-1371, 2010

Anurag Sethi, John Eargle, Alexis Black, and Zaida Luthey-Schulten.
Dynamical Networks in tRNA:protein complexes
Proc. Natl. Acad. Sci. U S A, 106(16):6620-6625, 2009
Supplementary Material


For a general introduction on how to prepare and analyze networks using NetworkView, visit the NetworkView Tutorial page.

An API reference for NetworkView has been generated as Tcldoc documentation.



This work was supported by the National Center for Supercomputing Applications [MCA03T027], the National Science Foundation [MCB-0844670] and through the Center for the Physics of Living Cells [PHY-0822613], and by the National Institutes of Health through the Center for Macromolecular Modeling and Bioinformatics [NIH-RR005969].